Double Force Scanning (DFS) is a computational method to predict rescue sites in proteins from their 3D structure. The software is available here:
The CVSA is a novel Collective Variable based on the M32K25 Structural Alphabet (SA). It can be used to bias the sampling of backbone conformations of fragments in a protein towards experimentally preferred local states during MD simulations. The CVSA was implemented in a modified version of PLUMED.